Commit Graph

  • 1f101df30e chore(branch): resolve translation conflicts with main fix/pdf-annotation-source-sharing Ewen 2026-10-04 00:21:47 +07:00
  • aafd5303e7 fix(pdf-annotations): invalidate stale writes and undo after sharing Ewen 2026-10-04 00:20:16 +07:00
  • 1ceca72138 test(pdf-annotations): cover shared ownership and command inventories Ewen 2026-10-04 00:08:02 +07:00
  • 97f8e6c9de fix(pdf-annotations): share notes across explicitly linked PDF sources Ewen 2026-10-04 00:03:12 +07:00
  • 11ec6f3b55 fix(windows-runtime): satisfy workflow test lint ci/windows-runtime-signing Ewen 2026-10-04 00:18:06 +08:00
  • b1df3e80a1 ci(windows-runtime): sign standalone runtime artifacts Ewen 2026-10-04 00:03:30 +08:00
  • 9babfe3834 docs(release): note final-window additions for v0.35.0 docs/release-notes-late-window Ewen 2026-10-03 08:33:16 -07:00
  • 25b3fcd065 fix(notebook): map WSL UNC paths without shelling wslpath (#3254) main 2026-10-03 09:31:41 -06:00
  • 08d5149112 feat(connectors): add IEDB immunology evidence tools (#3261) nasus2002 2026-10-03 23:31:22 +08:00
  • cb30c01497 fix(windows-runtime): prevent AppContainer package-scope stalls (#3257) Ewen 2026-10-03 22:30:32 +07:00
  • 5344c931b0 ci(signing): harden trusted signing module install against gallery flakes (#3260) v0.35.0 Ewen 2026-10-03 21:06:59 +07:00
  • 1121fda8a5 ci(signing): pre-install azure trusted signing module before windows packaging (#3259) Ewen 2026-10-03 20:22:48 +07:00
  • 70c00684a8 fix(notebook): harden windows runtime probe confirmation and diagnostics (#3255) Ewen 2026-10-03 19:16:13 +07:00
  • 386c6cacc9 fix(notebook): block system parent ACL grants (#3256) Ewen 2026-10-03 16:32:06 +07:00
  • 56d15c8227 fix(pdf-structure): harden literature layout extraction (#3247) Ewen 2026-10-03 14:56:23 +07:00
  • db3bed9c06 feat(connectors): add PDB protein sequence search (#3250) nasus2002 2026-10-03 15:16:57 +08:00
  • 36dbc0e736 fix(notebook): authorize WSL UNC path environments fix/wsl2-unc-path-mapping Ewen 2026-10-03 15:14:47 +08:00
  • f499e7033d fix(settings): truncate skill descriptions with hover text (#3253) Ewen 2026-10-03 13:20:29 +07:00
  • 67ccbe1e9e fix(notebook): map WSL UNC paths without shelling wslpath Korrz777 2026-10-02 23:17:24 -06:00
  • a69c9977d8 docs(release): note late-window additions for v0.35.0 (#3252) Ewen 2026-10-03 12:06:16 +07:00
  • 886aabd429 fix(notebook): grant parent traversal for managed paths (#3246) Ewen 2026-10-03 11:49:46 +07:00
  • 91a0e31358 fix(ci): capture Windows installer exit code (#3251) Ewen 2026-10-03 11:48:39 +07:00
  • a39c9a134e feat(network): clarify access rules and review private services (#3249) Ewen 2026-10-03 04:17:21 +00:00
  • 81aa550a74 chore(release): bump to v0.35.0 (#3248) Ewen 2026-10-03 09:07:53 +07:00
  • b016d5b225 test(ci): stabilize scheduled regression fixtures (#3245) Ewen 2026-10-03 08:19:14 +07:00
  • e6228c0d22 fix(notebook): harden Windows REPL startup and cleanup (#3173) wen2zhou 2026-10-03 08:23:51 +08:00
  • 98bd6e5dae fix(codex): expose granted folders to sessions (#3209) Coderfu 2026-10-02 23:49:54 +00:00
  • cebd6f612e fix(ci): migrate macOS 14 runners to macOS 15 (#3244) Ewen 2026-10-03 06:56:00 +07:00
  • b16ab0bf06 feat(models): expand OpenCode Zen catalog and add Jev classification (#3239) wen2zhou 2026-10-03 07:21:15 +08:00
  • 5609e9f07c fix(workspace-notebook): surface raw folder permission recovery (#3235) Ewen 2026-10-02 15:37:59 +00:00
  • c859df5c0d fix(session): persist turn outcomes and scope operation failures (#3171) 2026-10-02 23:26:24 +08:00
  • 5a55dc78f6 feat(omics): add GEO matrix discovery and preflight tools (#3238) nasus2002 2026-10-02 14:58:53 +00:00
  • bfb6ea1b63 fix(pdf): align outline navigation with section positions (#3234) Ewen 2026-10-02 21:58:38 +07:00
  • 53e78435dd feat(settings): add continuous usage chart inspection (#3236) Ewen 2026-10-02 21:26:09 +07:00
  • 11f93f49ad fix(notebook): match pip generated entry points (#3237) Ewen 2026-10-02 14:02:52 +00:00
  • 97ca1534e7 fix(pdf): clarify unavailable outlines and float narrow navigation (#3232) Ewen 2026-10-02 13:25:23 +00:00
  • 67effe21b0 fix(ci): repair scheduled source regression failures (#3233) Ewen 2026-10-02 13:17:46 +00:00
  • 7c4e97bd0c feat(connectors): add Cellosaurus identity and quality tools (#3230) nasus2002 2026-10-02 13:05:30 +00:00
  • 4658a83f36 feat(connectors): add Monarch phenotype association evidence (#3227) nasus2002 2026-10-02 20:33:04 +08:00
  • 3689be2e1f perf(pdf): add bounded parallel figure and table analysis (#3228) Ewen 2026-10-02 11:54:52 +00:00
  • 234a464cfe fix(pdf): float notes sidebar in narrow readers (#3229) Ewen 2026-10-02 11:50:35 +00:00
  • ee7a84d9cb fix(notebook): offer contextual folder access grants (#3220) Ewen 2026-10-02 17:59:44 +07:00
  • fc20fffda1 fix(workspace): compact message tool cards (#3226) Ewen 2026-10-02 10:19:31 +00:00
  • aef8d6a346 fix(sidebar): match navigation padding to session rows (#3225) Ewen 2026-10-02 16:41:00 +07:00
  • c87a5668d6 fix(session): restore durable ask-user waits after restart (#3223) Ewen 2026-10-02 16:11:14 +07:00
  • 65722ad90e feat(workspace): accept file drops across the conversation (#3224) Ewen 2026-10-02 16:09:38 +07:00
  • dd18407cdd fix(packages): deduplicate identical .science objects (#3206) CoderfuandEwen 2026-10-02 17:03:07 +08:00
  • 528e2e97c6 feat(pdf-structure): support uploaded PDF extraction (#3222) Ewen 2026-10-02 16:01:57 +07:00
  • a2095b94b8 ci(windows-runtime): warm the shared compiler cache on main (#3221) Ewen 2026-10-02 15:11:32 +07:00
  • 42a7c0372c fix(replay): preserve notebook state and stabilize generated galleries (#3219) Ewen 2026-10-02 14:57:29 +07:00
  • 01f5953f7d fix(notebook): repair isolated Windows runtime execution (#3105) Ewen 2026-10-02 13:37:40 +07:00
  • 448abae327 fix(replay): improve history access and compact preview chrome (#3218) Ewen 2026-10-02 05:58:49 +00:00
  • 22163a1777 fix(notebook): retain scientific I/O paths and loader uncertainty (#3216) Ewen 2026-10-02 12:57:02 +07:00
  • 7389310583 fix(pdf-structure): preserve native content across varied paper layouts (#3217) Ewen 2026-10-02 12:56:45 +07:00
  • 1ef05260d4 fix(replay): improve previews and playback interactions (#3215) Ewen 2026-10-02 04:18:32 +00:00
  • 9ef968bef5 fix(settings): compact the network status card (#3214) Ewen 2026-10-02 03:09:06 +00:00
  • 136ecb8271 feat(replay): replay sessions and discuss recorded steps (#3140) 2026-10-02 10:51:44 +08:00
  • 4bac906577 fix(ci): stabilize scheduled regression checks (#3213) Ewen 2026-10-02 07:05:46 +07:00
  • 2f33d8c327 fix(accessibility): raise workspace import hint contrast (#3205) nightly Coderfu 2026-10-01 15:08:43 +00:00
  • c4eb9335fb fix(notices): make background errors dismissible (#3203) Ewen 2026-10-01 12:15:24 +00:00
  • d623623c69 feat(window-menu): add Windows titlebar application menus (#3201) Ewen 2026-10-01 19:15:12 +07:00
  • 4ba75b18fd fix(acp): correlate native OpenCode skill updates (#3198) Ewen 2026-10-01 10:14:38 +00:00
  • 86c2b18023 fix(permissions): unify ACP grant matching and diagnose fallback approvals (#3189) Ewen 2026-10-01 08:45:05 +00:00
  • a24db17978 refactor(renderer): group contracts and literature workflows (#3191) Ewen 2026-10-01 15:16:29 +07:00
  • 60bf2b049a test(windows): preserve process-tree cleanup on timeout test/windows-renderer-efficiency Ewen 2026-10-01 16:09:37 +08:00
  • c44d6a8e78 test(windows): limit scheduling probe to source launches Ewen 2026-10-01 16:02:37 +08:00
  • aa744b8629 test(windows): cover native renderer efficiency mode Ewen 2026-10-01 15:58:55 +08:00
  • f38568abd0 fix(deps): resolve vulnerable transitive dependencies (#3190) Ewen 2026-10-01 05:13:48 +00:00
  • 6f7981af09 refactor(literature): extract workflow and view owners (#3188) Ewen 2026-10-01 03:45:31 +00:00
  • 46d5f168a9 perf(tests): reuse migrated fixtures for managed-file versions (#3186) Ewen 2026-10-01 03:01:49 +00:00
  • 431cd8b60e test(workspace): refresh empty conversation visual baseline (#3187) Ewen 2026-10-01 02:43:57 +00:00
  • 12b04f4c82 build(toolchain): use native TypeScript for static checks (#3183) Ewen 2026-10-01 08:34:26 +07:00
  • 7422ba8b2a fix(workflows): protect drafts and clarify action feedback (#3182) Ewen 2026-10-01 01:22:29 +00:00
  • bd72688624 chore(release): bump to v0.34.1 (#3185) v0.34.1 Ewen 2026-10-01 08:21:33 +07:00
  • c1d24badd2 fix(ci): stabilize scheduled validation regressions (#3184) Ewen 2026-10-01 06:14:18 +07:00
  • ef63c5b35b feat(connectors): add CELLxGENE Discover metadata and file discovery (#3178) nasus2002 2026-09-30 21:36:35 +00:00
  • a9179a8694 feat(library-preview): add inbox navigation and batch acceptance (#3174) Ewen 2026-09-30 14:03:22 +00:00
  • fb6f449aef fix(windows-installer): allow reinstall after old parent removal (#3176) Ewen 2026-09-30 13:43:39 +00:00
  • f11b33e849 docs(contributing): clarify module-impact registration workflow (#3177) Ewen 2026-09-30 20:41:59 +07:00
  • 4337e3b184 feat(workspace): add .science import entry to empty state (#3170) wen2zhou 2026-09-30 12:07:22 +00:00
  • f9d9c6b81c fix(literature): simplify journal mapping hints (#3172) Ewen 2026-09-30 11:56:13 +00:00
  • 296415511f fix(journals): clarify journal import column roles (#3169) Ewen 2026-09-30 10:22:59 +00:00
  • 1ab0109539 ci(test-routing): preserve package checks for documentation (#3166) Ewen 2026-09-30 17:22:52 +07:00
  • 6553fc3f20 fix(credentials): restore Linux KWallet startup (#3168) Ewen 2026-09-30 09:50:52 +00:00
  • 012b1fa3d2 fix(literature): correct merged table preview styling (#3165) Ewen 2026-09-30 09:22:52 +00:00
  • b42415813d fix(literature): add an overflow shadow to pinned columns (#3167) Ewen 2026-09-30 09:17:28 +00:00
  • cebf900eee feat(session-package): allow acknowledged sensitive-content export (#3164) Ewen 2026-09-30 08:03:29 +00:00
  • ab8b8cc870 fix(notebook): harden Python and R scientific lineage capture (#3163) Ewen 2026-09-30 07:57:30 +00:00
  • d6a543dfdc fix(pdf-structure): preserve native figure and table content (#3162) Ewen 2026-09-30 07:46:34 +00:00
  • 022e070314 fix(notebook): share sandbox npm global tools across sessions (#3160) Ewen 2026-09-30 13:29:05 +07:00
  • d23f84e656 fix(literature): clear annotation selection before closing reader (#3156) Ewen 2026-09-30 03:31:27 +00:00
  • 7fb0652041 feat(models): add gpt-6.1-sol without changing defaults (#3157) Ewen 2026-09-30 03:31:18 +00:00
  • 2b16e091f1 fix(notebook-tests): stabilize merge queue teardown fixtures (#3158) Ewen 2026-09-30 10:35:16 +07:00
  • a4a2b992a1 fix(literature): show reference URL in detail view (#3151) Ada.Liu 2026-09-30 03:18:14 +00:00
  • 33c12ff5ce feat(diagnostics): preserve troubleshooting evidence in local exports (#3143) wen2zhou 2026-09-30 10:29:38 +08:00
  • 174a10daf5 fix(tests): stabilize scheduled regression fixtures (#3155) Ewen 2026-09-30 00:35:14 +00:00
  • ecd7c61c0e fix(acp): preserve follow-up permissions after restart (#3147) 2026-09-29 21:57:38 +00:00
  • 806c1b75d9 fix(literature): validate journal filters and recognize alias columns (#3145) nasus2002 2026-09-29 21:54:07 +00:00
  • 4254a7e33f feat(connectors): add Alliance of Genome Resources tools (#3136) nasus2002 2026-09-29 14:57:54 +00:00
  • 80fbb8a6e2 fix(literature): retry invalidated journal entry reads (#3148) Ewen 2026-09-29 14:35:14 +00:00