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Andrew Hundt a775040358 fix(mcp,store,pagerank,pipeline): 18 bugs fixed, DF-1 degree precompute, pass_normalize, 11 TDD tests 
Phases 1-8 from comprehensive plan (notes/2026-03-26-0013-plan-*.md):

Phase 1 — Input validation (F1,F4,F6,F7,F9,F10,F15):
  mcp.c: empty label→NULL, limit≤0→default, sort_by/mode enum validation,
  regex pre-validation via cbm_regcomp, depth clamp, direction validation

Phase 2 — B7 Cypher param fix + CQ-2 project expansion:
  mcp.c:handle_query_graph reads "cypher" first with "query" fallback,
  uses resolve_project_store for "self"/"dep"/path shortcuts

Phase 3 — DRY resolve_project_store in 5 handlers:
  handle_get_graph_schema, handle_index_status, handle_get_architecture,
  handle_get_code_snippet, handle_index_dependencies

Phase 4 — DF-1 degree precompute (100× faster queries):
  store.c: node_degree table DDL, search SELECT uses LEFT JOIN with
  HC-6 fallback to edge COUNT, cbm_store_node_degree reads precomputed
  table, arch_hotspots uses nd.calls_in, arch_boundaries adds behavioral types
  pagerank.c: is_calls field, degree accumulation during edge iteration,
  node_degree batch INSERT after LinkRank, OOM-safe allocations

Phase 5 — B2/B5 name-based caller fallback:
  pass_calls.c: 3-step resolution (exact QN → shared helper → Module)
  graph_buffer.c: cbm_gbuf_resolve_by_name_in_file DRY helper (HC-1)

Phase 6 — B17/B13 class-method edge repair:
  NEW pass_normalize.c: enforces I2 (Method→Class) and I3 (Field→Class)
  invariants via QN prefix + name+label+file fallback. O(M+F) runtime.
  pipeline.c: normalize pass before dump. Makefile.cbm updated.

Phase 7 — CBMLangSpec section_node_types field:
  lang_specs.h: added section_node_types (17th field)
  lang_specs.c: all 64 language specs updated with NULL initializer

Phase 8 — IX-1..3 indexing pathway fixes:
  mcp.c: autoindex_failed + just_autoindexed flags in server struct,
  REQUIRE_STORE captures pipeline return code, build_resource_status
  shows "indexing" state + failure detail + action_required hints

Additional fixes:
  G1: summary mode adds results=[] + results_suppressed=true
  CQ-3: Cypher + filter params produces warning

Tests: 2238 pass (11 new in test_input_validation.c covering F1,F6,F9,
F10,F15 edge cases, G1, CQ-3, IX-2). Updated test_store_nodes.c for
total degree. Updated test_token_reduction.c for G1 results key.

Signed-off-by: Andrew Hundt <ATHundt@gmail.com>
2026-03-26 01:59:37 -04:00
..
lsp
Fix Ubuntu CI: stack-use-after-return, L2 cache detection, memory leaks
2026-03-18 14:23:46 +01:00
vendored
Fix all memory leaks, vendor sqlite3, add Docker test infrastructure
2026-03-18 16:28:27 +01:00
ac.c
Replace vmem with mimalloc global allocator, add extraction-phase prescan, fix __init__.py QN collision
2026-03-17 22:05:57 +01:00
ac.h
Add C-native pipeline with blocking clang-tidy, cppcheck, clang-format linting
2026-03-15 19:26:12 +01:00
arena.c
Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files
2026-03-15 22:37:34 +01:00
arena.h
Replace vmem with mimalloc global allocator, add extraction-phase prescan, fix __init__.py QN collision
2026-03-17 22:05:57 +01:00
cbm.c
Full Windows portability: proper implementations, not stubs
2026-03-18 18:47:43 +01:00
cbm.h
Replace vmem with mimalloc global allocator, add extraction-phase prescan, fix __init__.py QN collision
2026-03-17 22:05:57 +01:00
extract_calls.c
Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files
2026-03-15 22:37:34 +01:00
extract_defs.c
Replace vmem with mimalloc global allocator, add extraction-phase prescan, fix __init__.py QN collision
2026-03-17 22:05:57 +01:00
extract_env_accesses.c
Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files
2026-03-15 22:37:34 +01:00
extract_imports.c
Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files
2026-03-15 22:37:34 +01:00
extract_semantic.c
Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files
2026-03-15 22:37:34 +01:00
extract_type_assigns.c
Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files
2026-03-15 22:37:34 +01:00
extract_type_refs.c
Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files
2026-03-15 22:37:34 +01:00
extract_unified.c
Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files
2026-03-15 22:37:34 +01:00
extract_unified.h
Add C-native pipeline with blocking clang-tidy, cppcheck, clang-format linting
2026-03-15 19:26:12 +01:00
extract_usages.c
Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files
2026-03-15 22:37:34 +01:00
grammar_bash.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_c_sharp.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_c.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_clojure.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_cmake.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_cobol.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_commonlisp.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_cpp.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_css.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_cuda.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_dart.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_dockerfile.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_elisp.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_elixir.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_elm.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_erlang.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_form.c
Add MATLAB, Lean 4, FORM, and Magma language support (59 -> 63)
2026-03-07 10:46:21 +01:00
grammar_fortran.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_fsharp.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_glsl.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_go.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_graphql.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_groovy.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_haskell.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_hcl.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_html.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_ini.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_java.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_javascript.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_json.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_julia.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_kotlin.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_lean.c
Add MATLAB, Lean 4, FORM, and Magma language support (59 -> 63)
2026-03-07 10:46:21 +01:00
grammar_lua.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_magma.c
Add MATLAB, Lean 4, FORM, and Magma language support (59 -> 63)
2026-03-07 10:46:21 +01:00
grammar_makefile.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_markdown.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_matlab.c
Add MATLAB, Lean 4, FORM, and Magma language support (59 -> 63)
2026-03-07 10:46:21 +01:00
grammar_meson.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_nix.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_objc.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_ocaml.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_perl.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_php.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_protobuf.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_python.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_r.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_ruby.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_rust.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_scala.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_scss.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_sql.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_svelte.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_swift.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_toml.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_tsx.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_typescript.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_verilog.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_vim.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_vue.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_wolfram.c
Add Wolfram Language support (64 languages) + fix caller attribution
2026-03-07 18:01:27 +01:00
grammar_xml.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_yaml.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
grammar_zig.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00
helpers.c
Replace vmem with mimalloc global allocator, add extraction-phase prescan, fix __init__.py QN collision
2026-03-17 22:05:57 +01:00
helpers.h
Add C-native pipeline with blocking clang-tidy, cppcheck, clang-format linting
2026-03-15 19:26:12 +01:00
lang_specs.c
fix(mcp,store,pagerank,pipeline): 18 bugs fixed, DF-1 degree precompute, pass_normalize, 11 TDD tests
2026-03-26 01:59:37 -04:00
lang_specs.h
fix(mcp,store,pagerank,pipeline): 18 bugs fixed, DF-1 degree precompute, pass_normalize, 11 TDD tests
2026-03-26 01:59:37 -04:00
lsp_all.c
Add C/C++ hybrid LSP resolver with type-aware call resolution
2026-03-13 00:07:28 +01:00
lz4_store.c
Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files
2026-03-15 22:37:34 +01:00
lz4_store.h
Add C-native pipeline with blocking clang-tidy, cppcheck, clang-format linting
2026-03-15 19:26:12 +01:00
preprocessor.cpp
Add C/C++ hybrid LSP resolver with type-aware call resolution
2026-03-13 00:07:28 +01:00
preprocessor.h
Add C-native pipeline with blocking clang-tidy, cppcheck, clang-format linting
2026-03-15 19:26:12 +01:00
sqlite_writer.c
Replace vmem with mimalloc global allocator, add extraction-phase prescan, fix __init__.py QN collision
2026-03-17 22:05:57 +01:00
sqlite_writer.h
Add C-native pipeline with blocking clang-tidy, cppcheck, clang-format linting
2026-03-15 19:26:12 +01:00
ts_runtime.c
v0.5: CBM tree-sitter engine, 59 vendored language grammars
2026-03-05 22:39:01 +01:00