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- Config store: persistent SQLite key-value in _config.db (get/set/delete/bool/int) - Config CLI: codebase-memory-mcp config list|get|set|reset Keys: auto_index (default false), auto_index_limit (default 50000) - Session detection: detect project root from CWD on MCP initialize - Auto-index: if auto_index=true and project not yet indexed, background pipeline - Watcher hookup: after index completes, register project for ongoing git polling - 6 new config store tests (open/close, get/set, bool, int, delete, persistence) Enable auto-indexing: codebase-memory-mcp config set auto_index true