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Set incremental_reindex=always and name its alternatives full_rebuild and fast_mode_indexes_only in src/pipeline/pipeline.h and src/cli/cli.c. Replace eager/stale_on_* development spellings with at_publish and defer_*_reindexes for derived-result and rank refresh policies. Keep obsolete spellings out of the product registry. Restrict pass_calls.c same-target registry metadata canonicalization to exact store-backed scratch graphs, preserving LSP target precedence without adding a lookup to normal full or parallel indexing. Verification: pipeline 385 passed; cli 243 passed; mcp 273 passed; tool_consolidation 113 passed; pagerank 60 passed. Signed-off-by: Andrew Hundt <ATHundt@gmail.com>