Andrew Hundt 0693d08edd mcp: add index_dependencies tool + AI grounding infrastructure ...

Register index_dependencies MCP tool for indexing dependency/library
source code into a separate dependency graph. Dependencies are stored
in {project}_deps.db (separate from project.db) and are NOT included
in queries unless include_dependencies=true is passed.

AI grounding safeguards (7-layer defense):
1. Storage: separate _deps.db not touched by index_repository
2. Query default: include_dependencies=false (deps excluded by default)
3. QN prefix: dep.{mgr}.{package}.{symbol} convention documented
4. Response field: "source":"project" / "source":"dependency" labels
5. Properties: "external":true on dependency nodes
6. Tool description: explicitly states "SEPARATE dependency graph"
7. Boundary markers: trace_call_path shows project→dep edges

Current state:
- Tool registered with full parameter validation (project, package_manager required)
- include_dependencies param added to search_graph with source field
- Handler returns structured "not_yet_implemented" status
- Full dep resolution pipeline (depindex module) designed but deferred

Tests: 12 new tests in test_depindex.c, all passing.
       All 2042 existing tests pass with zero regressions.

Next: implement src/depindex/ module for actual package resolution
      (uv/cargo/npm/bun), dependency file discovery, and pipeline
      integration per the plan in plans/serialized-pondering-puppy.md.
Signed-off-by: Andrew Hundt <ATHundt@gmail.com>

2026-03-20 00:08:16 -04:00

..

test_ac.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_arena.c

Remove macOS-internal headers inserted by clang-tidy (breaks Linux/GCC)

2026-03-18 01:52:05 +01:00

test_c_lsp.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_cli.c

Restore session auto-detect + auto-index + config CLI from Go

2026-03-19 20:13:17 +01:00

test_configlink.c

Fix Windows test compilation: mkdtemp, mkdir, setenv, pipe compat

2026-03-18 19:19:42 +01:00

test_cypher.c

Replace vmem with mimalloc global allocator, add extraction-phase prescan, fix __init__.py QN collision

2026-03-17 22:05:57 +01:00

test_depindex.c

mcp: add index_dependencies tool + AI grounding infrastructure

2026-03-20 00:08:16 -04:00

test_discover.c

Skip 12 discover tests on Windows (use Unix shell commands)

2026-03-19 03:19:06 +01:00

test_dyn_array.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_extraction.c

Replace vmem with mimalloc global allocator, add extraction-phase prescan, fix __init__.py QN collision

2026-03-17 22:05:57 +01:00

test_framework.h

Replace vmem with mimalloc global allocator, add extraction-phase prescan, fix __init__.py QN collision

2026-03-17 22:05:57 +01:00

test_gitignore.c

Fix 12 more Windows test failures: mkstemp, temp paths, TRE config

2026-03-19 02:58:03 +01:00

test_go_lsp.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_graph_buffer.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_hash_table.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_httplink.c

Fix cbm_mkdtemp: enlarge all test buffers to 256 bytes

2026-03-19 02:38:02 +01:00

test_infrascan.c

Add C-native pipeline with blocking clang-tidy, cppcheck, clang-format linting

2026-03-15 19:26:12 +01:00

test_integration.c

Fix Windows test compilation: mkdtemp, mkdir, setenv, pipe compat

2026-03-18 19:19:42 +01:00

test_language.c

Fix 12 more Windows test failures: mkstemp, temp paths, TRE config

2026-03-19 02:58:03 +01:00

test_log.c

Fix Windows test compilation: mkdtemp, mkdir, setenv, pipe compat

2026-03-18 19:19:42 +01:00

test_lz4.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_main.c

mcp: add index_dependencies tool + AI grounding infrastructure

2026-03-20 00:08:16 -04:00

test_mcp.c

Fix Windows test compilation: mkdtemp, mkdir, setenv, pipe compat

2026-03-18 19:19:42 +01:00

test_mem.c

Fix Windows test compilation: mkdtemp, mkdir, setenv, pipe compat

2026-03-18 19:19:42 +01:00

test_parallel.c

Fix Windows test compilation: mkdtemp, mkdir, setenv, pipe compat

2026-03-18 19:19:42 +01:00

test_pipeline.c

Fix cbm_mkdtemp: enlarge all test buffers to 256 bytes

2026-03-19 02:38:02 +01:00

test_platform.c

Add C-native pipeline with blocking clang-tidy, cppcheck, clang-format linting

2026-03-15 19:26:12 +01:00

test_registry.c

Replace vmem with mimalloc global allocator, add extraction-phase prescan, fix __init__.py QN collision

2026-03-17 22:05:57 +01:00

test_sqlite_writer.c

Fix 12 more Windows test failures: mkstemp, temp paths, TRE config

2026-03-19 02:58:03 +01:00

test_store_arch.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_store_edges.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_store_nodes.c

Fix all memory leaks, vendor sqlite3, add Docker test infrastructure

2026-03-18 16:28:27 +01:00

test_store_search.c

Fix flaky parallelism test, skip 4 remaining Windows compat issues

2026-03-19 03:34:36 +01:00

test_str_intern.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_str_util.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_traces.c

Resolve all clang-tidy, cppcheck, and clang-format warnings across 94 files

2026-03-15 22:37:34 +01:00

test_ui.c

Fix Windows UI config tests: replace system("mkdir -p") with cbm_mkdir_p()

2026-03-19 03:48:10 +01:00

test_vmem.c

Full Windows portability: proper implementations, not stubs

2026-03-18 18:47:43 +01:00

test_watcher.c

Fix cbm_mkdtemp: enlarge all test buffers to 256 bytes

2026-03-19 02:38:02 +01:00

test_worker_pool.c

Fix flaky parallelism test, skip 4 remaining Windows compat issues

2026-03-19 03:34:36 +01:00