Update README, generated docs, and bundled skills so auto-index and watcher text no longer implies incremental refresh is the default path.
Keep the wording aligned with the current config-backed default: full atomic rebuild unless incremental_reindex is explicitly enabled for benchmarking or canary coverage.
Signed-off-by: Andrew Hundt <ATHundt@gmail.com>
Update generated CLI skill text, packaged skill docs, and npm README examples for the current MCP surface: trace_path is the canonical trace tool, index_dependencies is present, and the streamlined/default surface should not be described as exactly 14 tools.
Replace unsupported search_graph direction examples with supported query_graph degree queries and fix stale query/result-limit wording in generated help. Keep measured performance/preprint claims unchanged.
Verified with: make -f Makefile.cbm cbm; make -f Makefile.cbm build/c/test-runner; CBM_ONLY_SUITE=cli build/c/test-runner; git diff --check.
Signed-off-by: Andrew Hundt <ATHundt@gmail.com>
- Delete cmd/codebase-memory-mcp/assets/ — skills and codex instructions
are embedded as C string literals in src/cli/cli.c since v0.5.0
- Move BENCHMARK.md to docs/ to reduce root clutter
- Fix setup scripts: replace stale go build with scripts/build.sh
- THIRD_PARTY.md: replace Go module dependencies with vendored C
libraries (sqlite3, mimalloc, mongoose, yyjson, xxhash, tre),
fix CGo reference to static compilation
Delete Go MCP server, CGo bridges, Go pipeline, store, tools, watcher,
cypher engine, language specs, and all Go tests. Replace Go pre-commit
hook with C-only linting (clang-tidy, cppcheck, clang-format, tests).
Tree-sitter extraction engine (internal/cbm/*.c) retained for C pipeline.
Complete C implementation of the indexing pipeline (src/), parallel worker
pool, graph buffer with merge support, SQLite writer, and 1893-test suite.
Linter setup: zero warnings from clang-tidy (all checks enabled, no NOLINT
suppressions), cppcheck, and clang-format. All issues fixed at source —
proper headers for external linkage, GROW_ARRAY macro restructured to
eliminate type parameter, null-deref paths guarded, named intermediates
for suspicious-argument checks.
Replace static 2GB default with platform-aware auto-detection:
- Linux: syscall.Sysinfo
- macOS: sysctl hw.memsize
- Windows: GlobalMemoryStatusEx
Falls back to 4GB if detection fails. User config still overrides.
Prevents both OOM kills (upper clamp) and excessive GC pressure (lower clamp).
- Fix ref counting race in ListProjects and watcher pollAll: use AcquireStore
instead of ForProject to prevent evictor from closing stores mid-query (#52)
- Add recoverStaleSHM: remove stale SHM files after SIGKILL to prevent
deadlock on next connection (#52)
- Increase busy_timeout from 5s to 10s for large databases (#52)
- Default GOMEMLIMIT to 2GB when not configured, preventing unbounded
memory growth and OOM kills (#49, #46)
- Reduce mmap_size from 256MB to 64MB per database (#49, #46)
- Increase watcher base interval from 1s to 5s and poll interval base
from 1s to 5s, reducing CPU usage by ~5x (#45)
- Normalize Windows drive letter to lowercase in ProjectNameFromPath,
preventing duplicate databases for same path (#50)
tools.Version was a hardcoded const that needed manual bumping.
Now it defaults to "dev" and is set from main.version (injected
via -ldflags during release builds) through tools.SetVersion().
- Fix Continue.dev invalid_type error: add properties:{} to list_projects schema (#15)
- Fix Windows paths: sanitize colons and backslashes in ProjectNameFromPath (#20)
- Fix update double-v prefix: strip v from version before display (#17)
- Fix update context canceled: DownloadAsset returns []byte, not ReadCloser (#17)
- Strip v prefix in release workflow ldflags (Unix + Windows builds)
- Add Gemini CLI, VS Code Copilot, and Zed to install/uninstall commands (#19)
- Add tests for new editor configs and Windows path cases
Tests that replace PATH with an empty temp dir break DLL resolution
on Windows (MSYS2 libgcc/libwinpthread). Append original PATH on
Windows so CGo-linked binaries can still find required DLLs.
- Replace Go-binding tree-sitter with vendored C grammars compiled via
CGo (internal/cbm/); eliminates all Go module/linker fragility
- Add 32 new languages: Clojure, CMake, COBOL, Common Lisp, CUDA, Elm,
Emacs Lisp, Fortran, F#, GLSL, GraphQL, INI, JSON, Julia, Makefile,
Markdown, Meson, Nix, Protobuf, Svelte, Verilog, Vim Script, Vue, XML
(plus C, C#, Erlang, SQL, YAML quality improvements)
- Adaptive worker concurrency and mmap prefetch for faster indexing
- Graph buffer: batched SQLite writes for 3-5x throughput improvement
- Fix cancellation test: use 50ms timeout (pipeline now indexes 212-file
Erlang repo in ~400ms, well under the old 2s deadline)
- Fix isTestFunction: add "Test" prefix for C#, "test" prefix for Scala
- Release workflow: build binary as `codebase-memory-mcp` (not
`codebase-memory-mcp-<os>-<arch>`) inside tarballs. Users extract
and get the correct name without renaming.
- Codex CLI: replace broken `codex mcp add/remove` calls with direct
config.toml manipulation. Codex uses [mcp_servers.<name>] sections,
not CLI subcommands.
- README: add explicit extract-and-move step to Quick Start.
claude mcp remove without -s user prompts interactively for scope,
which hangs when run from install/uninstall commands. Both
registerClaudeCodeMCP (pre-cleanup remove) and deregisterMCP
(uninstall) now pass -s user explicitly.
- TestMain: append .exe to binary name on Windows
- Add testEnvWithHome/setTestHome helpers for cross-platform HOME override
(Windows uses USERPROFILE, not HOME)
- Add exeSuffix() helper for fake binary creation
- Skip Unix-specific tests on Windows: shell RC detection, PATH append,
fallback path lookup
- Normalize CRLF in skill frontmatter check (git may convert on Windows)
Skill files were only written inside installClaudeCode(), which required
finding the `claude` CLI binary. In CI (Linux) with no claude installed,
skills were never written, causing 4 test failures.
Split into installSkills() (always runs) and registerClaudeCodeMCP()
(only when claude CLI found).
Add CLI mode for direct tool invocation from the shell — every MCP tool
can now be called without an MCP client. Useful for testing, scripting,
and CI pipelines.
Query engine rewrite: SQL LIKE pre-filtering extracts literal substrings
from regex patterns before scanning, batch degree counting replaces
per-node queries, and schema queries use id→label maps instead of 3-way
JOINs. Cypher relationship queries up to 600x faster on large graphs.
Incremental reindex 4x faster via content-hash skip optimization.
Upgrade to Go 1.26 (Green Tea GC) and SQLite v1.46.1.
Auto-sync: background watcher polls indexed projects for file changes
(mtime+size) and triggers incremental re-indexing automatically. Adaptive
polling interval scales with repo size (1s-60s). Non-blocking — uses
TryLock to skip if manual index_repository is in progress.
WithTransaction: changed signature to return a transaction-scoped Store
instead of mutating the shared querier field. Eliminates a data race
where concurrent read handlers could use a committed transaction.
Infrastructure file indexing: new pipeline pass indexes Dockerfiles,
docker-compose, cloudbuild, .env, Terraform, and YAML config files as
InfraFile nodes with structured properties.
Also includes: indexMu mutex on Server for safe concurrent access,
Claude Code skill file in repo, updated README with auto-sync docs.
MCP server that indexes codebases into a queryable knowledge graph.
Single Go binary, SQLite storage, 12 languages via tree-sitter.
Features: call graph, cross-service HTTP linking, dead code detection,
route nodes, Cypher queries, incremental reindex, JSON config scanning.
Andrew Hundt